ANF MetaBioDiv

Second edition (September 2023)

Welcome to the second edition of the ANF Exploration de la Diversité Taxonomique des Ecosystèmes par Metabarcoding. The aim of this course is to teach you how to run microbial ecology analyses (mostly alpha and beta diversity) from metabarcoding raw sequencing data using R.

Program

You can also find a pdf version of the program here

• Monday 4^th:
  • 09h00: Participants arrival
  • 12h30:
  • 14h00: R practical by Marc Garel + check technical issues
  • 16h00:
  • 16h15: R practical by Marc Garel + check technical issues
  • 18h00: free time
  • 19h30:
• Tuesday 5^th:
  • 08h30: Introduction Metabarcoding to metabarcoding by Loïs Maignien
  • 09h15: Analysing metabarcoding data with dada2 by Nicolas Henry
  • 10h15:
  • 10h30: Preprocessing: dada2 by Nicolas Henry
  • 12h30:
  • 14h00: Introduction to phyloseq
  • 15h00: Preprocessing: dada2 and Preprocessing: phyloseq by Nicolas Henry
  • 16h00:
  • 16h15: Preprocessing: dada2 and Preprocessing: phyloseq by Nicolas Henry
  • 18h00: free time
  • 19h30:
• Wednesday 6^th:
  • 09h15: Course on alpha diversity 1/2 by Fabrice Armougom and Pauline Lecoq
  • 10h15:
  • 10h30: Alpha diversity practical by Fabrice Armougom and Pauline Lecoq
  • 12h30:
  • 14h00: Course on alpha diversity 2/2 by Fabrice Armougom and Pauline Lecoq
  • 15h00: Alpha diversity practical Fabrice Armougom and Pauline Lecoq
  • 16h00:
  • 16h15: Alpha diversity practical Fabrice Armougom and Pauline Lecoq
  • 18h00: free time
  • 19h30:
• Thursday 7^th:
  • 09h15: Course on beta diversity 1/2 by Jean-Christophe Auguet
  • 10h15:
  • 10h30: Beta diversity practical by Jean-Christophe Auguet
  • 12h30:
  • 14h00: Course on beta diversity 2/2 by Jean-Christophe Auguet
  • 15h00: Beta diversity practical by Jean-Christophe Auguet
  • 16h00:
  • 16h15: Beta diversity practical by Jean-Christophe Auguet
  • 18h00: free time
  • 19h30:
• Friday 8^th:
  • 09h00: À la carte with
  • 12h30:
  • 14h00: End of the course