About

ANR MetaBioDiv

English

The Action Nationale de Formation CNRS-INSU MetaBioDiv, led by the Mediterranean Institut of Oceanography (Armougom F., MIO) and the Délégation Régionale Côte d’Azur CNRS (DR20, Pierrette Finsac), offers to the scientific community a formation to learn how to characterize microbial ecosystems biodiversity with R analysing data from high-throughput Illumina (Miseq) sequencing.

French

L’Action Nationale de Formation CNRS-INSU MetaBioDiv, portée par l’Institut Méditerranéen d’Océanologie (Armougom F., MIO) et la Délégation Régionale Côte d’Azur CNRS (DR20, Pierrette Finsac), propose à la communauté scientifique une formation sur la caractérisation de la biodiversité taxonomique d’écosystèmes (procaryotes et micro-eucaryotes) par le prisme du séquençage haut-débit Illumina (Miseq) et du traitement bio-informatique associé (outils R sous Rstudio).

Organisation committee and intervenants

Fabrice Armougom, MIO, Marseille

Jean-Christophe Auguet, Marbec, Montpellier

Charlotte Berthelier, Adaptation et Diversité en Milieu Marin Station Biologique de Roscoff

Marc Garel, MIO, Marseille

Nicolas Henry, ABiMS & FR2022 Tara GOSEE, Station Biologique de Roscoff

Elsa Mendes, MIO, Marseille

Lois Maignien, BEEP, Université de Brest

Sponsors

Plateforme OMICS, MIO, Marseille

Société Française de Bio-Informatique

Institut Français de Bioinformatique

Thanks the French Institute of Bioinformatics – IFB CNRS UAR3601 – for providing life science data and tools, storage and computing resources.

Partners

ABiMS beep marbec MIO

IFB Tara Océan

CNRS IRD

Libraries used in this course

renv::dependencies() |> 
    dplyr::pull(Package) |>
    unique() |>
    sort()
Finding R package dependencies ... [143/199] [144/199] [145/199] [146/199] [147/199] [148/199] [149/199] [150/199] [151/199] [152/199] [153/199] [154/199] [155/199] [156/199] [157/199] [158/199] [159/199] [160/199] [161/199] [162/199] [163/199] [164/199] [165/199] [166/199] [167/199] [168/199] [169/199] [170/199] [171/199] [172/199] [173/199] [174/199] [175/199] [176/199] [177/199] [178/199] [179/199] [180/199] [181/199] [182/199] [183/199] [184/199] [185/199] [186/199] [187/199] [188/199] [189/199] [190/199] [191/199] [192/199] [193/199] [194/199] [195/199] [196/199] [197/199] [198/199] [199/199] Done!
 [1] "ANCOMBC"          "ape"              "base"             "betapart"        
 [5] "Biostrings"       "bootstrap"        "colorspace"       "ComplexHeatmap"  
 [9] "corrplot"         "dada2"            "DECIPHER"         "devtools"        
[13] "dplyr"            "ecodist"          "fpc"              "FSA"             
[17] "ggplot2"          "ggpubr"           "ggrepel"          "graphics"        
[21] "grDevices"        "grid"             "gridExtra"        "GUniFrac"        
[25] "here"             "kableExtra"       "knitr"            "microbiome"      
[29] "microbiomeMarker" "modEvA"           "NbClust"          "parallel"        
[33] "patchwork"        "PCAtools"         "phangorn"         "phyloseq"        
[37] "plotly"           "plyr"             "RColorBrewer"     "renv"            
[41] "rmarkdown"        "scales"           "stats"            "tidyverse"       
[45] "treemap"          "treemapify"       "vegan"            "zCompositions"